The Future of Data Archiving

At the BES Annual Meeting 2015 in Edinburgh, a lively debate was held on the future of data archiving. The debate was recorded and the video can be viewed here.

The British Ecology Society (BES) has been mandating the archiving of data for all papers published in its journals since January 2014, so with the mandate having been in place for over 2 years this was a good opportunity to take stock of the impacts and look to the future. While it is recognised that data archiving presents both financial and time costs to researchers, the benefits of data preservation and validation of results help to advance science. The aim of the debate was to provide the opportunity for researchers to debate the pros and cons of data archiving in an open format. Continue reading “The Future of Data Archiving”

Demography beyond the population: Integrated demography comes of age

Assessing variation in population abundance over time and across space is a long-standing goal of population ecologists. Up to now, two main approaches have been mostly used to identify the factors driving observed fluctuations in population abundance. First, a pattern-oriented approach, based on the monitoring of population size, involves the analysis of time series of counts. In the most recent applications, these analyses lead to partitioning observed changes in population growth into different contributing factors, like current or past population density, environmental conditions, or demographic stochasticity. Second, a process-oriented approach, based on the monitoring of demographic parameters, involves the construction of age- or stage-structured demographic models. The steady increase of case studies aiming to monitor known-aged recognizable animals over most of their lifespan, the availability of statistical methods allowing reliable estimates of demographic parameters to be obtained from field data, and the development of a powerful framework to build a large range of matrix population models have all led to this process-oriented approach becoming a standard tool of population ecologists. It has become the gold standard in the context of both the management of exploited populations and the conservation of endangered populations. However, analyses of detailed monitoring of individuals have also revealed the existence of marked individual differences in most life history traits studied so far, which have been mostly ignored until now when using population-scale demographic modelling. To account for such sources of within-population variation, a trait-based demographic approach is required. Nowadays, Integral Projection Models (IPMs) provide a way to obtain more realistic demographic models that encompass the association between demographic parameters and, for instance, phenotypic traits. In their most extended version, IPMs include the four biological functions that are necessary and sufficient to obtain the distribution of a given continuous trait in a population at a given time from the distribution of the same trait in the same population one time-step before. These functions are the survival function linking survival probability to the trait value, the recruitment function linking the number of recruits to the trait value, the growth function linking the trait value at time t+1 to the trait value at time t, and the inheritance function linking the trait value of the offspring to the trait value of the parents.

Following the British Ecological Society Symposium “Demography Beyond the Population” that was held in Sheffield about one year ago, four papers derived from this symposium have just been published in Journal of Animal Ecology as part of the British Ecological Society Cross Journal Special Feature: Demography Beyond the Population. From the analysis of the contents of these four papers it appears that a new, integrated demography, comes of age. Continue reading “Demography beyond the population: Integrated demography comes of age”

Demography Beyond the Population

This exciting collaborative and interdisciplinary special feature integrates novel lines of research in the vast field of demography that directly interact with other ecological and evolutionary disciplines. The goal of the special feature is to highlight the interdisciplinary potential of demography and is further emphasised by the fact that the 21 articles are spread across all six journals of the British Ecological Society. The goal … Continue reading Demography Beyond the Population

From social network analysis to speciation in the Neotropics: exciting research by early career ornithologists.

As I mentioned in my earlier post, the joint American Ornithologists Union (AOU) and Cooper Ornithological Society (COS) conference this year emphasized a renewed focus on early career professionals.  Such a practice is key in supporting early careers folks in a time when the job market is tight and funding rates are very low.  Many of us may receive quality one-on-one mentoring at our home … Continue reading From social network analysis to speciation in the Neotropics: exciting research by early career ornithologists.

American Ornithologists Union focuses on fledging early career professionals

It is a hot Friday morning, the second to last day of an intimate AOU-COS meeting on the University of Oklahoma campus, and a big day for my lab. A number of my students are giving their first conference talks and have the jitters. I’ve listened to renditions between sessions and late into the night. I remember the not too distant past when I stood … Continue reading American Ornithologists Union focuses on fledging early career professionals

Life on the edge: celebrating a successful long-term ecological study

The Scottish isles of St Kilda, off the west coast of the Outer Hebrides, have an important place in my heart. It was on St Kilda where I first realised that not all sheep are boring, where I sustained my first fieldwork-related injury (a broken hip caused by an impact during a sheep-chasing incident!), where I successfully ran my first Research Council grant, and where … Continue reading Life on the edge: celebrating a successful long-term ecological study

My life as a wealth generation asset

A few years ago, someone with an interest in dynamical systems devised a complex financial product that allowed banks and other larger corporations to achieve a good return on their investments at limited risk. But it turned out that their money was not as safe as they thought, and things went belly up. Banks lost money hand over fist, some ended up bankrupt, while the taxpayer bailed others out. The global economy took a nosedive, and countries ended up being much more in debt than they would have liked. As the next general election approaches, we are told that things are improving in the UK, but the deficit is large, and it is not coming down as quickly as expected. This is a serious problem, and something that will take time to sort out. There must have been many very difficult meetings in Whitehall, with departments told they need to spend less money and, where possible, generate money. Whether one agrees with this strategy or not, the logic behind it is straightforward to follow: we need to pay off our debts so we should spend less money and generate more of it. Continue reading “My life as a wealth generation asset”

Modelers to the left of me, field biologists to the right; here I am, stuck in the middle with you

One of the things that I enjoy most about the science I do is collaborating with both field biologists who know their systems inside out, and theoreticians who’s specialist expertise is abstraction and equations. One thing I have learned from these collaborations is that every field or laboratory system exhibits some oddities. The Trinidadian guppy system is the latest, wonderful, system I have begun collaborating on, and it exhibits numerous quirks. One of my favourites is what we affectionately term ‘zombie males’. Because females store sperm, males can sire offspring after death. Such behavior is, of course, not particularly unusual, but this is the first time I have had to ponder whether it is necessary to incorporate such a life history ‘quirk’ in models, and if so, how. These system-specific oddities make me take issue with a quote from a theoretician colleague. It goes something like this: ‘reality is just a special case, and not a particularly interesting one’. Reality is, in fact, very interesting.   However, the oddities of each system do generate certain challenges for the modeler. Should they always be incorporated into models? Continue reading “Modelers to the left of me, field biologists to the right; here I am, stuck in the middle with you”

A Look Back At 2014

It’s been a busy old year at Journal of Animal Ecology, with lots of personnel changes and a few new initiatives. Here, we review some of these developments.

The blog

In terms of new initiatives, the highest profile is arguably this blog – Animal Ecology In Focus – which we started in June 2014. Although the senior editors were initially quite sceptical about whether this latest venture into social media would be successful, the feedback we have had so far suggests that it is a valued addition to our outputs, along with our Twitter feed (@AnimalEcology), our Facebook page, podcasts, videos, etc. The blog was kick-started by a controversial post by our own Tim Coulson on the latest UK badger cull trials and this theme was picked up again in a later post by the other Senior Editors, who offered the services of the Journal to Defra to provide an independent assessment of this year’s badger cull trial. The blog was subsequently highlighted by the BBC and cited in a Westminster debate by MPs from across the political divide. It is likely that this issue will continue to feature on our blog for some time to come. Other notable posts in the last six months include one by Ken Wilson highlighting the decline in entomological papers published in the Journal over the last 40 years, one by Ben Sheldon on funding long-term studies and a number of posts by Tim Coulson on issues such as sex-biases in science, the value of archiving data (with Ben), and a call for pre-proposals. In December, we opened up the blog for the first time to our Associate Editors, with a powerful post by Sonia Altizer and Julie Rushmore on the role of wildlife in the spread of Ebola virus. In 2015, we plan to invite other renowned experts in animal ecology to share their thoughts with on a range of topical issues. The first of these, by Dave Goulson, will appear shortly. If you have any ideas about what might make an interesting blog post, and who might write it, please contact us. Continue reading “A Look Back At 2014”